Research:amber tips pr: Revision history

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21 April 2025

  • curprev 23:3023:30, 21 April 2025 Eew947 talk contribs 2,143 bytes +2,143 Created page with "= Ren's example for running sander and pmemd = == Executables == Oscar's mod sander in /home/oscar/data2-oscar mod pmemd in /home/oscar/pmemd/src example mdin and run script files in /home/pren/AMOEBA/solvation/compare/ == A Quick Guide == TO run sander: xyzpdb ele.xyz analyze box30 PC > ele.analout /opt/amber/bin/amoeba_parm -name ele -title "water" > ele.amoeba_parm.out /opt/amber/bin/sander -i ele.mdin -c ele.in..."
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