Tinkersctipts

1. /home/pren/bin/density.sh some.xyz is a shell script to compute density for a Tinker xyz file. The second line of the file needs to be the box dimension
2. Convert from tinker xyz to PDB or cif (if more than 99,999 atoms). Let me if you need to add more functionality or have problems python ~/bin/tinker2pdb.py --water-type 349 --format cif popcbi221.xyz python ~/bin/tinker2pdb.py -h
3. In tinker "arcedit" is the command for converting between dcd and archive/xyz, extract frames, etc See ~pren/tinker8/2604/bin