User contributions for Pren
Jump to navigation
Jump to search
10 April 2026
- 18:5518:55, 10 April 2026 diff hist −8 Tinkermeeting:tinkermeeting2025 No edit summary current Tag: Visual edit
- 18:5518:55, 10 April 2026 diff hist +1 Tinkermeeting:tinkermeeting2025 No edit summary Tag: Visual edit
- 18:5518:55, 10 April 2026 diff hist +51 Tinkermeeting:tinkermeeting2025 No edit summary Tag: Visual edit
- 18:5518:55, 10 April 2026 diff hist +19 N File:TinkerMeeting 2025.jpg No edit summary current
- 18:5218:52, 10 April 2026 diff hist +1,520 N Tinkermeeting:tinkermeeting2025 Tinker 2025 Tag: Visual edit
- 18:5118:51, 10 April 2026 diff hist +38 TinkerMeeting"tinkerconf No edit summary current Tag: Visual edit: Switched
- 18:4918:49, 10 April 2026 diff hist +11 TinkerMeeting"tinkerconf No edit summary Tag: Visual edit
8 April 2026
- 20:2920:29, 8 April 2026 diff hist +83 Tutorial:tinkertut →How to generate input files Tag: Visual edit
- 20:2920:29, 8 April 2026 diff hist +569 N Tinkersctipts Created page with "# <code>/home/pren/bin/density.sh some.xyz</code> is a shell script to compute density for a Tinker xyz file. The second line of the file needs to be the box dimension # Convert from tinker xyz to PDB or cif (if more than 99,999 atoms). Let me if you need to add more functionality or have problems <code>python ~/bin/tinker2pdb.py --water-type 349 --format cif popcbi221.xyz</code> <code>python ~/bin/tinker2pdb.py -h</code> # In tinker "arcedit" is the command for conver..." current Tag: Visual edit
- 13:5913:59, 8 April 2026 diff hist +115 Tutorial:tinkertut →Recommended NVT and NPT combinations: semi Tag: Visual edit
6 April 2026
- 15:3015:30, 6 April 2026 diff hist +129 Tutorial:tinkertut →Available thermostat and barostat in TINKER (2021): pressure Tag: Visual edit
- 15:2815:28, 6 April 2026 diff hist +145 Tutorial:tinkertut →Purposes Tag: Visual edit
25 September 2025
- 19:2719:27, 25 September 2025 diff hist +5 Ammm:Poltype 2 →PDF file: current
- 19:2719:27, 25 September 2025 diff hist +24 Tutorial:amm →Neural Network Potential current
- 19:2619:26, 25 September 2025 diff hist +5 Ammm:NNP: Molecular Representations →PDF file: current
- 18:5318:53, 25 September 2025 diff hist 0 N File:REM2023.pdf No edit summary current
12 August 2025
- 20:0120:01, 12 August 2025 diff hist +128 Tutorial:tinkertut →AMOEBA Force Field Papers: Tag: Visual edit
- 15:0715:07, 12 August 2025 diff hist +31 Ammm:Mm mpole →Local frame definition current
- 15:0515:05, 12 August 2025 diff hist +7 Ammm:Mm mpole →Local frame definition Tag: Visual edit: Switched
- 15:0115:01, 12 August 2025 diff hist +35 Ammm:Mm mpole →Local frame definition
- 15:0115:01, 12 August 2025 diff hist +96 Ammm:Mm mpole →Local frame definition
2 April 2025
- 13:5113:51, 2 April 2025 diff hist +237 Tutorial:tinkertut →proteins, nucleic acids, common organics Tag: Visual edit
11 October 2024
- 16:3516:35, 11 October 2024 diff hist +639 Software:tinkergpu →Compile Tinker9 current
- 16:2916:29, 11 October 2024 diff hist +136 Tutorial:tinkertut →Command line
6 August 2024
- 15:3915:39, 6 August 2024 diff hist +139 Tutorial:tinkertut →MD setup-initial equilibration Tag: Visual edit
- 15:2815:28, 6 August 2024 diff hist +101 Tutorial:tinkertut →Recommended NVT and NPT combinations
- 15:2515:25, 6 August 2024 diff hist −1 Tutorial:tinkertut →Recommended NVT and NPT combinations
- 15:2515:25, 6 August 2024 diff hist +10 Tutorial:tinkertut →Recommended NVT and NPT combinations Tag: Visual edit
- 15:2015:20, 6 August 2024 diff hist +16 Tutorial:tinkertut →Recommended NVT and NPT combinations
- 15:2015:20, 6 August 2024 diff hist +155 Tutorial:tinkertut →Recommended NVT and NPT combinations
- 15:1615:16, 6 August 2024 diff hist +182 Tutorial:tinkertut →Recommended NVT and NPT combinations
5 August 2024
- 19:0019:00, 5 August 2024 diff hist +20 Tutorial:tinkertut →Available thermostat and barostat in TINKER (2021)
27 June 2024
- 19:3119:31, 27 June 2024 diff hist +320 Lab:newuser →login Tag: Visual edit
- 19:2519:25, 27 June 2024 diff hist +41 Lab:newuser →login from your laptop on and off campus Tag: Visual edit
- 19:2419:24, 27 June 2024 diff hist +403 Lab:newuser →login from your laptop on and off campus Tag: Visual edit
16 June 2024
- 15:1415:14, 16 June 2024 diff hist −2 Tinkermeeting:tinkermeeting2024 No edit summary current
- 15:1315:13, 16 June 2024 diff hist +27 Tinkermeeting:tinkermeeting2024 No edit summary
- 15:1115:11, 16 June 2024 diff hist −3 Tinkermeeting:tinkermeeting2024 No edit summary
- 15:1015:10, 16 June 2024 diff hist +1 Tinkermeeting:tinkermeeting2024 No edit summary
- 15:0915:09, 16 June 2024 diff hist +26 Tinkermeeting:tinkermeeting2024 No edit summary Tag: Visual edit: Switched
- 15:0815:08, 16 June 2024 diff hist +33 N File:Program.pdf Tinker 2024 program current
- 15:0715:07, 16 June 2024 diff hist +11 Tinkermeeting:tinkermeeting2024 No edit summary Tag: Visual edit: Switched
- 15:0615:06, 16 June 2024 diff hist −3 m Tinkermeeting:tinkermeeting2023 No edit summary current Tag: Visual edit
- 15:0515:05, 16 June 2024 diff hist −160 Tinkermeeting:tinkermeeting2023 No edit summary
- 15:0515:05, 16 June 2024 diff hist −34 Tinkermeeting:tinkermeeting2023 No edit summary
- 15:0415:04, 16 June 2024 diff hist +9 Tinkermeeting:tinkermeeting2023 No edit summary
- 15:0415:04, 16 June 2024 diff hist +2 Tinkermeeting:tinkermeeting2023 No edit summary Tag: Visual edit
- 15:0415:04, 16 June 2024 diff hist +75 m Tinkermeeting:tinkermeeting2023 No edit summary Tag: Visual edit
- 15:0315:03, 16 June 2024 diff hist +19 N File:2023-Tinker-Workshop.jpg No edit summary current
- 15:0015:00, 16 June 2024 diff hist +726 Tinkermeeting:tinkermeeting2023 Tinker2023 Tag: Visual edit
